Arbor will align your data to one reference genome (provided by you!), call variants with DeepVariant where possible or another variant caller where not possible and provide the output along with summary statistics for the read alignment and variant calling. This package includes calling single nucleotide polymorphisms and short INDELs. Structural variants are not included in this package.

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What is included in the long-read WGS variant calling bioinformatics package?
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