Over 400 Publications and Counting

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Munzar, J.D. et al. (2018). Comprehensive profiling of the ligand binding landscapes of duplexed aptamer families reveals widespread induced fit. Nature Communications

Park, Y.S. et al. (2018). A copper transcription factor, AfMac1, regulates both iron and copper homeostasis in the opportunistic fungal pathogen Aspergillus fumigatus. Biochemical Journal

Donohoe, O.H. et al. (2015). Identification and Characterization of Cyprinid Herpesvirus-3 (CyHV-3) Encoded MicroRNAs. PLoS One

Favela-Hernandez, J.M.J.  et al. (2015). Potential Mechanism of Action of 3′-Demethoxy-6-O-demethyl-isoguaiacin on Methicillin Resistant Staphylococcus aureus. Molecules

Gautam, U. et al. (2015). In-Vivo Gene Signatures ofMycobacterium tuberculosis in C3HeB/FeJ Mice. PLoS One

Kim, J.S. et al. (2015). Deoxycytidine production by a metabolically engineered Escherichia coli strain. Microbial Cell Factories

Kim, S. et al. (2015). Pseudomonas aeruginosaDesB Promotes Staphylococcus aureus Growth Inhibition in Coculture by Controlling the Synthesis of HAQs. PLoS One

Kim, J.S. et al. (2015). Transcriptional profiling of thymidine-producing strain recombineered from Escherichia coli BL21. American Journal of Botany

Kovac, J. et al. (2015). Antibiotic Resistance Modulation and Modes of Action of (-)-α-Pinene inCampylobacter jejuni. PLoS One

McGillivray, A. et al. (2015). TheMycobacterium tuberculosis Clp Gene Regulator Is Required for in Vitro Reactivation from Hypoxia-induced Dormancy. Journal of Biological Chemistry

Rahmani-Badi A. et al. (2015). Dissection of the cis-2-decenoic acid signaling network inPseudomonas aeruginosa using microarray technique. Frontiers in Microbiology

Shin, B. & Park, W.. (2015). Synergistic Effect of Oleanolic Acid on Aminoglycoside Antibiotics againstAcinetobacter baumannii. PLoS One

Yadav, M.K. et al. (2015). The Small Molecule DAM Inhibitor, Pyrimidinedione, Disrupts Streptococcus pneumoniae Biofilm Growth In Vitro. PLoS One

Zoschke, R. & Barkan, A. (2015). Genome-wide analysis of thylakoid-bound ribosomes in maize reveals principles of cotranslational targeting to the thylakoid membrane. PNAS

Clemente-Soto, A. et al. (2014). Potential Mechanism of Action of meso-Dihydroguaiaretic Acid onMycobacterium tuberculosis H37Rv. Molecules

Fox, D. et al. (2014). Sub-Inhibitory Fosmidomycin Exposures Elicits Oxidative Stress in Salmonella enterica Serovar typhimurium LT2. PLOS One

Hammani, K. and A. Barkan. (2014). An mTERF domain protein functions in group II intron splicing in maize chloroplasts. Nucleic Acid Research

Kim, M. et al. (2014). Development of a phylogenetic microarray for comprehensive analysis of ruminal bacterial communities. Journal of Applied Microbiology

Laranjo, M. et al. (2014). Genes commonly involved in acid tolerance are not overexpressed in the plant microsymbiont Mesorhizobium loti MAFF303099 upon acidic shock. Applied Microbiology and Biotechnology

Park, S. et al. (2014). Metabolic engineering of Corynebacterium glutamicum for L-arginine production. Nature Communications

Trigui, H. et al. (2014). A regulatory feedback loop between RpoS and SpoT supports the survival of Legionella pneumophila in water. Applied and Environmental Microbiology

Wu, Z. et al. (2014). Genetic Diversity and Antimicrobial Susceptibility of Campylobacter jejuni Isolates Associated with Sheep Abortion in the United States and Great Britain. Journal of Clinical Microbiology

Alda, F. et al. (2018). Mitogenomic divergence between three pairs of putative geminate fishes from Panama. Mitochondrial DNA Part B.

Alfaro, M. E. et al. (2018). Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary. Nature Ecology & Evolution.

Andermann, T. et al. (2018). Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements. BioRxiv.

Arora, S. et al. (2018). Resistance gene discovery and cloning by sequence capture and association genetics. BioRxiv.

Aylward, M. L. et al. (2018). A novel environmental DNA (eDNA) sampling method for aye-ayes from their feeding traces. BioRxiv.

Bonett, R. M. et al. (2018). Rapid phenotypic evolution following shifts in life cycle complexity. Proc. R. Soc. B.

Bover, P. et al. (2018). Molecular phylogenetics supports the origin of an endemic Balearic shrew lineage (Nesiotites) coincident with the Messinian Salinity Crisis. Molecular Phylogenetics and Evolution.

Bryson Jr, R. W. et al. (2018). Phylogenomic insights into the diversification of salamanders in the Isthmura bellii group across the Mexican highlands. Molecular Phylogenetics and Evolution.

Campbell, K. L. et al. (2018). Altered hemoglobin co-factor sensitivity does not underlie the evolution of derived fossorial specializations in the family Talpidae. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology.

Delsuc, F. et al. (2018). Resolving the phylogenetic position of Darwin’s extinct ground sloth (Mylodon darwinii) using mitogenomic and nuclear exon data. Proc. R. Soc. B.

Derkarabetian, S. et al. (2018). A stable phylogenomic classification of Travunioidea (Arachnida, Opiliones, Laniatores) based on sequence capture of ultraconserved elements. ZooKeys.

Drosou, K. et al. (2018). The kinship of two 12th Dynasty mummies revealed by ancient DNA sequencing. Journal of Archaeological Science: Reports.

Emery, M. V. et al. (2018). Ancient Roman mitochondrial genomes and isotopes reveal relationships and geographic origins at the local and pan-Mediterranean scales. Journal of Archaeological Science: Reports.

Eriksson, J. S. et al. (2018). Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae). BMC Evolutionary Biology.

Gates, D. J. et al. (2018). Filtering of target sequence capture individuals facilitates species tree construction in the plant subtribe Iochrominae (Solanaceae). Molecular Phylogenetics and Evolution.

Gernandt, D. S. et al. (2018). Multi-locus phylogenetics, lineage sorting, and reticulation in Pinus subsection Australes. American Journal of Botany.

Giarla, T. C. et al. (2018). Isolation by marine barriers and climate explain areas of endemism in an island rodent. Journal of Biogeography.

Goolsby, E. W. et al. (2018). Molecular evolution of key metabolic genes during transitions to C 4 and CAM photosynthesis. American Journal of Botany.

Gorden, E. M. et al. (2018). Repair of DNA damage caused by cytosine deamination in mitochondrial DNA of forensic case samples. Forensic Science International: Genetics.

Günther, T. et al. (2018). Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation. PLOS Biology.

Hedin, M. et al. (2018). Phylogenomic reclassification of the world’s most venomous spiders (Mygalomorphae, Atracinae), with implications for venom evolution. Scientific Reports.

Hedin, M. et al. (2018). Sequence capture phylogenomics of eyeless Cicurina spiders from Texas caves, with emphasis on US federally-endangered species from Bexar County (Araneae, Hahniidae). ZooKeys.

Heintzman, P.D. et al. (2018). A new genus of horse from Pleistocene North America. eLife.

Hendricks, S. A. et al. (2018). Natural re-colonization and admixture of wolves (Canis lupus) in the US Pacific Northwest: challenges for the protection and management of rare and endangered taxa. Heredity.

Honap, T. P. et al. (2018). Mycobacterium leprae genomes from naturally infected nonhuman primates. PLOS Neglected Tropical Diseases.

Jensen, E. L. et al. (2018). Temporal mitogenomics of the Galapagos giant tortoise from Pinzón reveals potential biases in population genetic inference. Journal of Heredity.

Kates, H. R. et al. (2018). Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus. American Journal of Botany.

Loreille, O. et al. (2018). Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens. Genes.

Maixner, F. et al. (2018). The Iceman’s Last Meal Consisted of Fat, Wild Meat, and Cereals. Current Biology.

Marchal, C. et al. (2018). BED-domain containing immune receptors confer diverse resistance spectra to yellow rust. BioRxiv.

Marciniak, S. et al. (2018). A multi-faceted anthropological and genomic approach to framing Plasmodium falciparum malaria in Imperial period central-southern Italy (1st–4th c. CE). Journal of Anthropological Archaeology.

Martin, R. P. et al. (2018). Light in the Darkness: New Perspective on Lanternfish Relationships and Classification Using Genomic and Morphological Data. Molecular Phylogenetics and Evolution.

McCartney-Melstad, E. et al. (2018). Genomic Data from an Endangered Amphibian Reveal Unforeseen Consequences of Fragmentation by Roads. BioRxiv.

McColl, H. et al. (2018). Ancient Genomics Reveals Four Prehistoric Migration Waves into Southeast Asia. BioRxiv.

McGuire, J. A. et al. (2018). Squeezing water from a stone: high-throughput sequencing from a 145-year old holotype resolves (barely) a cryptic species problem in flying lizards. PeerJ.

Morales, A. E. et al. (2018). Evidence that Myotis lucifugus ‘subspecies’ are five non-sister species, despite gene flow. Systematic Biology.

Morales‐Briones, D. F. et al. (2018). Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae). New Phytologist.

Muñoz-Rodríguez, P. et al. (2018). Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia. Current Biology.

Paff, T. et al. (2018). Diagnostic yield of a targeted gene panel in primary ciliary dyskinesia patients. Human Mutation.

Pfeifer, S. P. et al. (2018). The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow. Molecular Biology and Evolution.

Phuong, M. A. et al. (2018). Targeted sequencing of venom genes from cone snail genomes improves understanding of conotoxin molecular evolution. Molecular Biology and Evolution.

Quattrini, A. et al. (2018). Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems. Molecular Ecology Resources.

Rincón-Sandoval, M. et al. (2018). Mitochondrial genomes of the headstanders Megaleporinus muyscorum (Steindachner 1900) and Megaleporinus obtusidens (Valenciennes 1837), (Characiformes, Anostomidae).Mitochondrial DNA Part B.

Rincón-Sandoval, M. et al. (2018). Mitochondrial genomes of the South American electric knifefishes Eigenmannia humboldtii (Steindachner 1878), Eigenmannia limbata (Schreiner and Miranda Ribeiro 1903), Sternopygus aequilabiatus (Humboldt 1805) and Sternopygus macrurus (Bloch and Schneider 1801), (Gymnotiformes, Sternopygidae). Mitochondrial DNA Part B.

Rodriguez, Z. B. et al. (2018). Multiple origins of green blood in New Guinea lizards. Science Advances.

Ross, Z. P. et al. (2018). The paradox of HBV evolution as revealed from a 16th century mummy. PLOS Pathogens.

Schroeder, H. et al. (2018). Origins and genetic legacies of the Caribbean Taino. Proceedings of the National Academy of Sciences.

Schweizer, R. M. et al. (2018). Natural selection and origin of a melanistic allele in North American gray wolves. Molecular Biology and Evolution.

Stubbs, R. L. et al. (2018). Pseudo-parallel patterns of disjunctions in an Arctic-alpine plant lineage. Molecular Phylogenetics and Evolution.

Tierney, S. M. et al. (2018). Massive parallel regression: a précis of genetic mechanisms for vision loss in diving beetles. Integrative and Comparative Biology.

Vatanparast, M. et al. (2018). Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics. Applications in Plant Sciences.

Veeramah, K. R. et al. (2018). Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria. Proceedings of the National Academy of Sciences.

White, L. C. et al. (2018). Ancient mitochondrial genomes reveal the demographic history and phylogeography of the extinct, enigmatic thylacine (Thylacinus cynocephalus). Journal of Biogeography.

Wolf, P. G. et al. (2018). Target sequence capture of nuclear-encoded genes for phylogenetic analysis in ferns. Applications in Plant Sciences.

Wood, H. M. et al. (2018). Next-Generation museum genomics: phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea). Molecular Phylogenetics and Evolution.

Younger, J. L. et al. (2018). Hidden diversity of forest birds in Madagascar revealed using integrative taxonomy. Molecular Phylogenetics and Evolution.

Alexander, A. M. et al. (2017). Genomic data reveals potential for hybridization, introgression, and incomplete lineage sorting to confound phylogenetic relationships in an adaptive radiation of narrow-mouth frogs. Evolution.

Arcila, D. et al. (2017). Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life. Nature Ecology & Evolution.

Baca, S. M. et al. (2017). Ultraconserved elements show utility in phylogenetic inference of Adephaga (Coleoptera) and suggest paraphyly of ‘Hydradephaga’: Phylogeny of Adephaga inferred with UCEs. Systematic Entomology.

Borowiec, M. L. (2017). Convergent evolution of the army ant syndrome and congruence in big-data phylogenetics. BioRxiv.

Brabham, H. J. et al. (2017). An ancient integration in a plant NLR is maintained as a trans-species polymorphism. BioRxiv.

Branstetter, M. G. et al. (2017). Enriching the ant tree of life: enhanced UCE bait set for genome-scale phylogenetics of ants and other Hymenoptera. Methods in Ecology and Evolution.

Bryson, R. W. et al. (2017). A phylogenomic perspective on the biogeography of skinks in the Plestiodon brevirostris group inferred from target enrichment of ultraconserved elements. Journal of Biogeography.

Burrel, S. et al. (2017). Ancient Recombination Events between Human Herpes Simplex Viruses. Molecular Biology and Evolution.

Burress, E. D. et al. (2017). Phylogenomics of pike cichlids (Cichlidae: Crenicichla): the rapid evolution and trophic diversification of an incipient species flock. Journal of Evolutionary Biology.

Burridge, A. J. et al. (2017). Conversion of array-based single nucleotide polymorphic markers for use in targeted genotyping by sequencing in hexaploid wheat (Triticum aestivum). Plant Biotechnology Journal.

Campillo, L. C. et al. (2017). Genomic data resolve gene tree discordance in spiderhunters (Nectariniidae, Arachnothera ). Molecular Phylogenetics and Evolution.

Chakrabarty, P. et al. (2017). Phylogenomic Systematics of Ostariophysan Fishes: Ultraconserved Elements Support the Surprising Non-Monophyly of Characiformes. Systematic Biology.

Christmas, M. J. et al. (2017). Targeted capture to assess neutral genomic variation in the narrow-leaf hopbush across a continental biodiversity refugium. Scientific Reports.

Chyleński, M. et al. (2017). Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC. BMC Evolutionary Biology.

Crowl, A. A. et al. (2017). Embracing discordance: Phylogenomic analyses provide evidence for allopolyploidy leading to cryptic diversity in a Mediterranean Campanula (Campanulaceae) clade. Evolution.

Cruz-Dávalos, D. I. et al. (2017). Experimental conditions improving in-solution target enrichment for ancient DNA. Molecular Ecology Resources.

Dam, M. H. V. et al. (2017). Ultraconserved elements (UCEs) resolve the phylogeny of Australasian smurf-weevils. PLOS ONE.

Dávalos, D. I. C. et al. (2017). In-solution Y-chromosome capture-enrichment on ancient DNA libraries. BioRxiv.

Devault, A. M. et al. (2017). A molecular portrait of maternal sepsis from Byzantine Troy. ELife.

Duggan, A. T. et al. (2017). Genetic Discontinuity between the Maritime Archaic and Beothuk Populations in Newfoundland, Canada. Current Biology.

Elbers, J. P. et al. (2017). Population genetic inferences using immune gene SNPs mirror patterns inferred by microsatellites. Molecular Ecology Resources.

Eriksson, J. S. et al. (2017). A cryptic species produced by autopolyploidy and subsequent introgression involving Medicago prostrata (Fabaceae). Molecular Phylogenetics and Evolution.

Esselstyn, J. A. et al. (2017). Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements. Genome Biology and Evolution.

Evanitsky, M. N. et al. (2017). Mitochondrial genomes of the regionally extinct Nittany Lion (Puma concolor from Pennsylvania). BioRxiv.

Fehren-Schmitz, L. et al. (2017). Genetic Ancestry of Rapanui before and after European Contact. Current Biology.

Fiddes, I. T. et al. (2017). Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis. BioRxiv.

Figueiro, G. et al. (2017). Análisis Del Genoma Mitocondrial De Dos Individuos Inhumados En El Sitio Arqueológico Cg14e01 “ISLA Larga” (ROCHA, Uruguay). Revista Argentina de Antropología Biológica.

Foerster, D. et al. (2017). Targeted re-sequencing of coding DNA sequences for SNP discovery in non-model species. BioRxiv.

Folk, R. A. et al. (2017). Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms. Systematic Biology.

Froese, D. et al. (2017). Fossil and genomic evidence constrains the timing of bison arrival in North America. Proceedings of the National Academy of Sciences.

Gallagher, J. P. et al. (2017). A New Species of Cotton from Wake Atoll, Gossypium stephensii (Malvaceae). Systematic Botany.

García, N. et al. (2017). Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae). Molecular Phylogenetics and Evolution.
Gaudry, M. J. et al. (2017). Evolution of UCP1 Transcriptional Regulatory Elements Across the Mammalian Phylogeny. Frontiers in Physiology.

Gaudry, M. J. et al. (2017). Inactivation of thermogenic UCP1 as a historical contingency in multiple placental mammal clades. Science Advances.

Giolai, M. et al. (2017). Comparative analysis of targeted long read sequencing approaches for characterization of a plant’s immune receptor repertoire. BMC Genomics.

Gray, H. W. I. et al. (2017). Cryptic Lineage Differentiation Among Indo-Pacific Bottlenose Dolphins (Tursiops aduncus) in the Northwest Indian Ocean. Molecular Phylogenetics and Evolution.

Grealy, A. et al. (2017). Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell. Molecular Phylogenetics and Evolution.

Grover, C. E. et al. (2017). Nucleotide diversity in the two co-resident genomes of allopolyploid cotton. Plant Systematics and Evolution.

Gutiérrez, E. E. et al. (2017). A gene-tree test of the traditional taxonomy of American deer: the importance of voucher specimens, geographic data, and dense sampling. ZooKeys.

Heintzman, P. D. et al. (2017). A new genus of horse from Pleistocene North America. BioRxiv.

Hulsey, C. D. et al. (2017). Phylogenomic analysis of Lake Malawi cichlid fishes: Further evidence that the three-stage model of diversification does not fit. Molecular Phylogenetics and Evolution.

Ješovnik, A. et al. (2017). Phylogenomic species delimitation and host-symbiont coevolution in the fungus-farming ant genus SericomyrmexMayr (Hymenoptera: Formicidae): ultraconserved elements (UCEs) resolve a recent radiation. Systematic Entomology.

Jiang, J. et al. (2017). Gene markers for exon capture and phylogenomics in ray-finned fishes. BioRxiv.

Juras, A. et al. (2017). Diverse origin of mitochondrial lineages in Iron Age Black Sea Scythians. Scientific Reports.

Juras, A. et al. (2017). Investigating kinship of Neolithic post-LBK human remains from Krusza Zamkowa, Poland using ancient DNA. Forensic Science International: Genetics.

Kamneva, O. K. et al. (2017). Evaluating allopolyploid origins in strawberries (Fragaria) using haplotypes generated from target capture sequencing. BMC Evolutionary Biology.

Karpinski, E. et al. (2017). Molecular identification of paleofeces from Bechan Cave, southeastern Utah, USA. Quaternary International.

Kennett, D. J. et al. (2017). Archaeogenomic evidence reveals prehistoric matrilineal dynasty. Nature Communications.

Kingsley, E. P. et al. (2017). The ultimate and proximate mechanisms driving the evolution of long tails in forest deer mice. Evolution.

Kirillova, I. V. et al. (2017). Discovery of the skull of Stephanorhinus kirchbergensi (Jäger, 1839) above the Arctic Circle. Quaternary Research.

Kistler, L. et al. (2017). A massively parallel strategy for STR marker development, capture, and genotyping. Nucleic Acids Research.

Kohrn, B. F. et al. (2017). An Efficient Pipeline to Generate Data for Studies in Plastid Population Genomics and Phylogeography. Applications in Plant Sciences.

K.Yu, T. et al. (2017). A bioinformatic pipeline for NGS data analysis and mutation calling in human solid tumors. Biomeditsinskaya Khimiya.

Lan, T. et al. (2017). Evolutionary history of enigmatic bears in the Tibetan Plateau–Himalaya region and the identity of the yeti. Proc. R. Soc. B.

Landis, J. B. et al. (2017). Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae). BMC Genomics.

Lindo, J. et al. (2017). Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity. Proceedings of the National Academy of Sciences.

Liu, J. et al. (2017). Multilocus DNA barcoding – Species Identification with Multilocus Data. BioRxiv.

Longo, S. J. et al. (2017). Phylogenomic analysis of a rapid radiation of misfit fishes (Syngnathiformes) using ultraconserved elements. Molecular Phylogenetics and Evolution.

Marshall, C. et al. (2017). Performance evaluation of a mitogenome capture and illumina sequencing protocol using non-probative, case-type skeletal samples: Implications for the use of a positive control in a next-generation sequencing procedure. Forensic Science International: Genetics.

Maschenko, E. N. et al. (2017). The Zhenya Mammoth (Mammuthus primigenius (Blum.)): Taphonomy, geology, age, morphology and ancient DNA of a 48,000 year old frozen mummy from western Taimyr, Russia. Quaternary International.

Medina, R. et al. (2017). Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae. Molecular Phylogenetics and Evolution.

Mohandesan, E. et al. (2017). Combined hybridization capture and shotgun sequencing for ancient DNA analysis of extinct wild and domestic dromedary camel. Molecular Ecology Resources.

Molto, J. E. et al. (2017). Complete Mitochondrial Genome Sequencing of a Burial from a Romano–Christian Cemetery in the Dakhleh Oasis, Egypt: Preliminary Indications. Genes.

Moore, A. et al. (2017). Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo (Caryophyllales). BioRxiv.

Morales, A. E. et al. (2017). Speciation with Gene Flow in North American Myotis Bats. Systematic Biology.

Nielsen, E. E. et al. (2017). Extracting DNA from ‘jaws’: high yield and quality from archived tiger shark (Galeocerdo cuvier) skeletal material. Molecular Ecology Resources.

Onar, V. et al. (2017). Did the historical range of the European bison (Bison bonasus L.) extend further south?—a new finding from the Yenikapı Metro and Marmaray excavation, Turkey. Mammal Research.

Paijmans, J. L. A. et al. (2017). Evolutionary History of Saber-Toothed Cats Based on Ancient Mitogenomics. Current Biology.

Panzera, A. et al. (2017). Phylogenomic analysis of the Chilean clade of Liolaemus lizards (Squamata: Liolaemidae) based on sequence capture data. PeerJ.

Perry, T. et al. (2017). Ancient DNA analysis of the extinct North American flat-headed peccary ( Platygonus compressus ). Molecular Phylogenetics and Evolution.

Pfeifer, S. P. et al. (2017). The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow. BioRxiv.

Phuong, M. A. et al. (2017). Targeted sequencing of venom genes from cone snail genomes reveals coupling between dietary breadth and conotoxin diversity. BioRxiv.

Pie, M. R. et al. (2017). Phylogenomic Species Delimitation In Microendemic Frogs Of The Brazilian Atlantic Forest. BioRxiv.

Platt, R. N. et al. (2017). Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats. Systematic Biology.

Prebus, M. (2017). Insights into the evolution, biogeography and natural history of the acorn ants, genus Temnothorax Mayr (hymenoptera: Formicidae). BMC Evolutionary Biology.

Ruane, S. et al. (2017). Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens. Molecular Ecology Resources.

Sánchez Barreiro, F. et al. (2017). Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes. Molecular Ecology Resources.

Savage, A. E. et al. (2017). Lost but not forgotten: MHC genotypes predict overwinter survival despite depauperate MHC diversity in a declining frog. Conservation Genetics.

Shaffer, H. B. et al. (2017). Phylogenomic analyses of 539 highly informative loci dates a fully resolved time tree for the major clades of living turtles (Testudines). Molecular Phylogenetics and Evolution.

Singhal, S. et al. (2017). Squamate Conserved Loci (SqCL): A unified set of conserved loci for phylogenomics and population genetics of squamate reptiles. Molecular Ecology Resources.

Song, S. et al. (2017). Species delimitation and phylogenetic reconstruction of the sinipercids (Perciformes: Sinipercidae) based on target enrichment of thousands of nuclear coding sequences. Molecular Phylogenetics and Evolution.

Souza, C. A. et al. (2017). Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus). Scientific Reports.

Starrett, J. et al. (2017). High phylogenetic utility of an ultraconserved element probe set designed for Arachnida. Molecular Ecology Resources.

Ströher, P. R. et al. (2017). The mitochondrial genome of Octostruma stenognatha and its phylogenetic implications. Insectes Sociaux.

Tennessen, J. A. et al. (2017). A Targeted Capture Linkage Map Anchors the Genome of the Schistosomiasis Vector Snail, Biomphalaria glabrata. G3: Genes, Genomes, Genetics.

Thomas, J. E. et al. (2017). An ‛Aukward’ Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks. Genes.

Trimpert, J. et al. (2017). A phylogenomic analysis of Marek’s disease virus (MDV) reveals independent paths to virulence in Eurasia and North America. Evolutionary Applications.

Vezzulli, L. et al. (2017). Whole-Genome Enrichment Provides Deep Insights into Vibrio cholerae Metagenome from an African River. Microbial Ecology.

vonHoldt, B. M. et al. (2017). Structural variants in genes associated with human Williams-Beuren syndrome underlie stereotypical hypersociability in domestic dogs. Science Advances.

Wang, N. et al. (2017). Historical relationships of three enigmatic phasianid genera (Aves: Galliformes) inferred using phylogenomic and mitogenomic data. Molecular Phylogenetics and Evolution.

Wei, N. et al. (2017). Genetic mapping and phylogenetic analysis reveal intraspecific variation in sex chromosomes of the Virginian strawberry. Journal of Heredity.

Wei, N. et al. (2017). Present-day sympatry belies the evolutionary origin of a high-order polyploid. New Phytologist.

White, W. T. et al. (2017). Phylogeny of the manta and devilrays (Chondrichthyes: mobulidae), with an updated taxonomic arrangement for the family. Zoological Journal of the Linnean Society.

Zarza, E. et al. (2017). Bridging multilocus species delimitation and DNA barcoding through target enrichment of UCEs: A case study with Mexican highland frogs. BioRxiv.

Ali, O. A. et al. (2016). RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping. Genetics.

Bailey, S. E. et al. (2016). The use of museum samples for large-scale sequence capture: a study of congeneric horseshoe bats (family Rhinolophidae). Biological Journal of the Linnean Society.

Blaimer, B. B. et al. (2016). Phylogenomics, biogeography and diversification of obligate mealybug-tending ants in the genus Acropyga. Molecular Phylogenetics and Evolution.

Blaimer, B. B. et al. (2016). Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens. PLOS ONE.

Branstetter, M. G. et al. (2016). Into the tropics: phylogenomics and evolutionary dynamics of a contrarian clade of ants. BioRxiv.

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