International Plant & Animal Genome (PAG) 30 – in San Diego, CA. Focus: NGS

Location: Pacific C Date: Monday, January 16, 12:50 p.m., PT Speakers: 12:50 p.m. Introductory Remarks Sofia Granja Martins, MSc – University of Oxford – UK (Presenting Author) – 1:00 p.m. Adventures in Capturing Mitochondrial Genomes from Ancient DNA Libraries Junli Zhang, Ph.D. – University of California, Davis – USA (Presenting Author) 1:25 p.m. A Second Generation Capture Panel for Cost-Effective Sequencing of Genome Regulatory Regions in Wheat and Relatives Alexandre R. Zuntini, Ph.D. – Royal Botanic Gardens, Kew – UK (Presenting Author) – 1:50 p.m. (TBD) In this workshop, we will hear from researchers from the University of Oxford, the University of California, Davis, and the Royal Botanic Gardens, Kew about their recent work on plant and animal applications of phylogenetics, functional genomics, and evolutionary biology, all enabled by the myBaits^® targeted next-generation sequencing (NGS) system from Daicel Arbor Biosciences.

Number PO0067 Authors: Alison Devault, Ph.D. (Daicel Arbor Biosciences)  With the recent launch of multiple novel high-throughput sequencing (HTS) platforms, the landscape of HTS workflow options is richer than ever before. Choosing a targeted sequencing solution that is compatible with sequencing on any current or future HTS platform is important for maximizing the utility of a given assay. The myBaits^® hybridization capture system from Daicel Arbor Biosciences is by design universally compatible with virtually any HTS workflow, whether short- or long-read. With highly versatile custom probe design algorithms and platform-agnostic protocol options, myBaits is a robust solution for achieving any DNA or RNA targeted sequencing need for any species or sample type. In this poster, we highlight the technical features of myBaits that permit its unique versatility in the modern HTS landscape, including data examples demonstrating its universal application with both short- and long-read HTS platforms relevant to the plant and animal genomics community.  View Poster

Number PE0068 Authors: Linda Barthel, Jake Enk, Tina Lan, Benjamin Steil (Daicel Arbor Biosciences)  Abstract: In situ hybridization (ISH) probes built from pools of synthetic single-stranded oligonucleotides are more specific and versatile than probes derived from BACs and other biological sources. The myTags^® Custom ISH probe system from Daicel Arbor Biosciences utilizes a sophisticated in silico design process to identify and eliminate repetitive and other nonspecific elements that BAC-derived probes typically retain. Here we demonstrate the high specificity of customized myTags probe sets compared to BAC-derived alternatives, and outline design and experimental recommendations key to plant and animal genomics applications where enhanced specificity and versatility is critical. Combined with flexible synthesis and reporter labeling configurations, myTags represents an ideal and cost-effective toolset for a wide variety of genomics applications including chromosome painting and identification, haplotyping, and 3D/4D spatial genomics analysis.  View Poster

Location: Town and County A Date: Sunday, January 15, 2023 – 1:30 p.m. PT

Location: Pacific H-I (2nd floor)  Date: Sunday, January 15, 2023 – 4:00 p.m. PT

Location: Pacific C Date: Sunday, January 15, 2023 – 8:00 a.m. PT

Click on the product below to view PDF.

• myTags

[ab_icon icon=”file-pdf-o”] myTags Chromosome Indexing by FISH App Note [ab_icon icon=”file-pdf-o”] myTags Custom Product Sheet

• myReads

[ab_icon icon=”file-pdf-o”] myReads NGS Services Product Sheet [ab_icon icon=”file-pdf-o”] myReads NGS Service Packages [ab_icon icon=”file-pdf-o” myReads NGS Service Packages for Wheat

• myBaits

[ab_icon icon=”file-pdf-o”] myBaits Hybridization Capture Kits Product Sheet [ab_icon icon=”file-pdf-o”] myBaits Custom DNA Seq Product Sheet [ab_icon icon=”file-pdf-o”] myBaits Custom RNA Seq Product Sheet [ab_icon icon=”file-pdf-o”] myBaits Custom Methyl Seq Product Sheet [ab_icon icon=”file-pdf-o”] myBaits Microbial Targeted Genomics App Note [ab_icon icon=”file-pdf-o”] myBaits NLR_Gene_Resequencing Expression using cDNA RenSeq App Note

• myTXTL

[ab_icon icon=”file-pdf-o”] myTXTL Product Sheet

Location: Town and Country B Date: Tuesday, January 17, 2023 – 4:00 p.m. PT Speaker: Shawn Quinn – Curio Genomics – USA Workshop: IWGSC – From Structural to Functional Wheat Genomics