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Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation
…first Scandinavians remain elusive and several hypotheses exist based on archaeology, climate modeling, and genetics. By analyzing the genomes of early Scandinavian hunter-gatherers, we show that their migrations followed two…
The paradox of HBV evolution as revealed from a 16th century mummy
Author summary Hepatitis B virus (HBV) exerts formidable morbidity and mortality in humans. We used ancient DNA techniques to recover the complete genome sequence of an HBV from the mummified…
Phylogenomics of Piranhas and Pacus (Serrasalmidae) Uncovers How Dietary Convergence and Parallelism Obfuscate Traditional Morphological Taxonomy
…omnivorous taxa. We clarify the relationships among all serrasalmid genera, propose new subfamily affiliations, and support hemiodontids as the sister taxon to Serrasalmidae. [Characiformes; exon capture; ichthyochory; molecular time-calibration; piscivory.]…
Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo Clade (Caryophyllales)
…for the “portullugo” (Caryophyllales), a moderately sized lineage of flowering plants (~ 2200 species) that includes the cacti and harbors many evolutionary transitions to C$$_{mathrm{4}}$$ and CAM photosynthesis. Including multi-gene…
Phylogenomics and classification of Notropis and related shiners (Cypriniformes: Leuciscidae) and the utility of exon capture on lower taxonomic groups
…dataset of 1,004 loci and 286,455 base pairs. Despite the large dataset, only 32,349 bp (11.29%) were phylogenetically informative. In our maximum likelihood tree, 78% of nodes are 100% bootstrap…
Neotropical niche evolution of Otoba trees in the context of global biogeography of the nutmeg family
…sampled phylogeny of Myristicaceae to date, inferred using publicly available plastid data. We then use environmental niche modelling, biogeographical reconstruction, phylogenetic principle components analysis and Ornstein–Uhlenbeck models to infer biogeography…
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